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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100712221, updated on 8-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSONIG00000036483
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
11
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG10 NC_031975.2 (30700228..31114081, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG10 NC_031975.1 (92530..505586)

Linkage Group LG10 - NC_031975.2Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC106098880 Neighboring gene uncharacterized LOC106098879

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031975.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    30700228..31114081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025910688.1 → XP_025766473.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A669EGC8
    Related
    ENSONIP00000070112.1, ENSONIT00000065012.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_013276741.3 → XP_013132195.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A669EGC8
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_005472310.4 → XP_005472367.1  delta-sarcoglycan isoform X2

    See identical proteins and their annotated locations for XP_005472367.1

    UniProtKB/TrEMBL
    A0A669EGC8
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_003453954.5 → XP_003454002.2  delta-sarcoglycan isoform X1

    See identical proteins and their annotated locations for XP_003454002.2

    UniProtKB/TrEMBL
    A0A669B7D2, A0A669EGC8
    Related
    ENSONIP00000031633.1, ENSONIT00000050994.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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