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LOC100712117 procollagen galactosyltransferase 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100712117, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100712117
Gene description
procollagen galactosyltransferase 1
See related
Ensembl:ENSONIG00000016358
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in kidney (RPKM 7.9), whole embryo (RPKM 6.9) and 7 other tissues See more
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Genomic context

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See LOC100712117 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
12
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG6 NC_031971.2 (30779351..30798672)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG6 NC_031971.1 (14550322..14569117)

Linkage Group LG6 - NC_031971.2Genomic Context describing neighboring genes Neighboring gene CD97 antigen Neighboring gene long-chain fatty acid transport protein 1 Neighboring gene uncharacterized LOC102081952 Neighboring gene nucleoredoxin-like protein 1 Neighboring gene nucleoredoxin like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031971.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    30779351..30798672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013274284.3 → XP_013129738.1  procollagen galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A669BRX0
    Related
    ENSONIP00000072198.1, ENSONIT00000066312.1
    Conserved Domains (2) summary
    cl01298
    Location:326 → 511
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:40 → 87
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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