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LOC100711277 mitochondrial carnitine/acylcarnitine carrier protein [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100711277, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100711277
Gene description
mitochondrial carnitine/acylcarnitine carrier protein
See related
Ensembl:ENSONIG00000018895
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
slc25a20
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Genomic context

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See LOC100711277 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
20
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (21453385..21468609)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG5 NC_031970.1 (15414324..15429545)

Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor Neighboring gene NCK interacting protein with SH3 domain Neighboring gene msx2-interacting protein Neighboring gene filamin binding LIM protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cAMP-dependent protein kinase type II-alpha regulatory subunit; mitochondrial carnitine/acylcarnitine carrier protein
Names
solute carrier family 25 member 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    21453385..21468609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019358889.2 → XP_019214434.1  cAMP-dependent protein kinase type II-alpha regulatory subunit isoform X2

  2. XM_003441425.5 → XP_003441473.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X1

    UniProtKB/TrEMBL
    A0A669BPR0, I3KRP7
    Related
    ENSONIP00000036395.1, ENSONIT00000040641.1
    Conserved Domains (1) summary
    pfam00153
    Location:108 → 198
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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