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tmtc2a transmembrane O-mannosyltransferase targeting cadherins 2a [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100707010, updated on 8-Mar-2024

Summary

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Gene symbol
tmtc2a
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2a
See related
Ensembl:ENSONIG00000011550
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
tmtc2
Expression
Biased expression in brain (RPKM 6.3), whole embryo (RPKM 3.8) and 4 other tissues See more
Orthologs
zebrafish all
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Genomic context

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See tmtc2a in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
12
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG17 NC_031981.2 (12157866..12221803, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG17 NC_031981.1 (12177665..12241594, complement)

Linkage Group LG17 - NC_031981.2Genomic Context describing neighboring genes Neighboring gene poly [ADP-ribose] polymerase 11 Neighboring gene poly [ADP-ribose] polymerase 11-like Neighboring gene methyltransferase like 25 Neighboring gene coiled-coil domain containing 59

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2
Names
transmembrane and tetratricopeptide repeat containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031981.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    12157866..12221803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003444998.5 → XP_003445046.1  transmembrane and TPR repeat-containing protein 2

    UniProtKB/TrEMBL
    A0A669CGT8, I3K0A1
    Related
    ENSONIP00000014546.2, ENSONIT00000014557.2
    Conserved Domains (6) summary
    sd00006
    Location:510 → 538
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:510 → 537
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:262 → 335
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:510 → 571
    TPR_11; TPR repeat
    pfam13424
    Location:574 → 651
    TPR_12; Tetratricopeptide repeat
    pfam13432
    Location:766 → 829
    TPR_16; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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