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hs3st1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100706648, updated on 8-Mar-2024

Summary

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Gene symbol
hs3st1
Gene description
heparan sulfate (glucosamine) 3-O-sulfotransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See hs3st1 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
2
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG2 NC_031966.2 (16364805..16367419)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG2 NC_031966.1 (4537023..4539634)

Linkage Group LG2 - NC_031966.2Genomic Context describing neighboring genes Neighboring gene NK3 homeobox 2 Neighboring gene RAB28, member RAS oncogene family Neighboring gene uncharacterized LOC112847977 Neighboring gene uncharacterized LOC112847976

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 1
Names
heparan sulfate-glucosamine 3-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031966.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    16364805..16367419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005467338.4 → XP_005467395.1  heparan sulfate glucosamine 3-O-sulfotransferase 1

    UniProtKB/TrEMBL
    I3KYG4
    Conserved Domains (1) summary
    pfam00685
    Location:54 → 291
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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