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LOC100706353 carbohydrate sulfotransferase 6 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100706353, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100706353
Gene description
carbohydrate sulfotransferase 6
See related
Ensembl:ENSONIG00000021305
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in blood (RPKM 8.4), whole embryo (RPKM 1.2) and 1 other tissue See more
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Genomic context

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See LOC100706353 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
2
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (5048350..5055860)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (10891030..10897109, complement)

Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene tropomyosin-like Neighboring gene uncharacterized LOC109203011 Neighboring gene carbohydrate sulfotransferase 6 Neighboring gene spire-type actin nucleation factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    5048350..5055860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003439562.5 → XP_003439610.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_003439610.1

    UniProtKB/TrEMBL
    I3KZR0
    Conserved Domains (1) summary
    cl21551
    Location:45 → 295
    Sulfotransfer_3; Sulfotransferase family

  2. XM_005449311.4 → XP_005449368.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_005449368.1

    UniProtKB/TrEMBL
    I3KZR0
    Related
    ENSONIP00000026607.1, ENSONIT00000026631.2
    Conserved Domains (1) summary
    cl21551
    Location:45 → 295
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases