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LOC100706089 carbohydrate sulfotransferase 5 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100706089, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100706089
Gene description
carbohydrate sulfotransferase 5
See related
Ensembl:ENSONIG00000021304
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See LOC100706089 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
4
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (4961139..4968037)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (10977358..10984480, complement)

Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 231 Neighboring gene carbohydrate sulfotransferase 6 Neighboring gene uncharacterized LOC109202763 Neighboring gene ATP-dependent RNA helicase DDX54-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    4961139..4968037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019360823.2 → XP_019216368.1  carbohydrate sulfotransferase 5 isoform X1

    UniProtKB/TrEMBL
    I3KZQ9
    Related
    ENSONIP00000026606.2, ENSONIT00000026630.2

  2. XM_013264422.3 → XP_013119876.1  carbohydrate sulfotransferase 5 isoform X2

    Conserved Domains (1) summary
    cl21551
    Location:45 → 328
    Sulfotransfer_1; Sulfotransferase domain

  3. XM_019360824.2 → XP_019216369.1  carbohydrate sulfotransferase 5 isoform X1

    UniProtKB/TrEMBL
    I3KZQ9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases