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kirrel1b kirre like nephrin family adhesion molecule 1b [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100705859, updated on 8-Mar-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
Ensembl:ENSONIG00000015138
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in brain (RPKM 1.5), whole embryo (RPKM 1.3) and 7 other tissues See more
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
15
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG18 NC_031982.2 (26728454..26809306, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG18 NC_031982.1 (32248681..32327538, complement)

Linkage Group LG18 - NC_031982.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100706127 Neighboring gene uncharacterized LOC109195677 Neighboring gene uncharacterized LOC102075733 Neighboring gene cell adhesion molecule 3 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031982.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    26728454..26809306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013272702.3 → XP_013128156.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A669DXF9, I3KD58
    Related
    ENSONIP00000019053.1, ENSONIT00000019070.2
    Conserved Domains (6) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam07679
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:306 → 387
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:224 → 289
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain

  2. XM_013272701.3 → XP_013128155.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A669DXF9
    Related
    ENSONIP00000063461.1, ENSONIT00000082781.1
    Conserved Domains (6) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam07679
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:306 → 387
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:224 → 289
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain
Nucleotide Protein
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