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cog5 component of oligomeric golgi complex 5 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100704111, updated on 8-Mar-2024

Summary

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Gene symbol
cog5
Gene description
component of oligomeric golgi complex 5
See related
Ensembl:ENSONIG00000014198
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 69.7), brain (RPKM 15.1) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See cog5 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
22
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG17 NC_031981.2 (181607..243789)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG17 NC_031981.1 (1399980..1462124, complement)

Linkage Group LG17 - NC_031981.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109195285 Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 1 Neighboring gene probable G-protein coupled receptor 22 Neighboring gene uncharacterized LOC112842646 Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 Neighboring gene AE binding protein 2 Neighboring gene pleckstrin homology domain containing A5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031981.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    181607..243789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019346478.2 → XP_019202023.2  LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 5

    UniProtKB/TrEMBL
    I3K9Q1
    Related
    ENSONIP00000017846.2, ENSONIT00000017861.2
    Conserved Domains (2) summary
    pfam10392
    Location:45 → 167
    COG5; Golgi transport complex subunit 5
    cl25732
    Location:66 → 329
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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