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LOC100703873 xylosyltransferase 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100703873, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100703873
Gene description
xylosyltransferase 1
See related
Ensembl:ENSONIG00000009456
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in ovary (RPKM 20.9), brain (RPKM 3.7) and 3 other tissues See more
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Genomic context

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See LOC100703873 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
13
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG4 NC_031969.2 (32638109..32679938)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG4 NC_031969.1 (4110672..4151291, complement)

Linkage Group LG4 - NC_031969.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109201766 Neighboring gene uncharacterized LOC109201877 Neighboring gene uncharacterized LOC100699194 Neighboring gene uncharacterized LOC112846631 Neighboring gene uncharacterized LOC112846632 Neighboring gene K(lysine) acetyltransferase 8 Neighboring gene ring finger protein 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031969.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    32638109..32679938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025906472.1 → XP_025762257.1  xylosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A669DWV9, I3JSN7
    Related
    ENSONIP00000011882.2, ENSONIT00000011891.2
    Conserved Domains (2) summary
    pfam12529
    Location:586 → 769
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:301 → 553
    Branch; Core-2/I-Branching enzyme

  2. XM_025906473.1 → XP_025762258.1  xylosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A669DWV9
    Conserved Domains (2) summary
    pfam12529
    Location:586 → 769
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:301 → 553
    Branch; Core-2/I-Branching enzyme

  3. XM_003442574.5 → XP_003442622.1  xylosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A669D6J1, A0A669DWV9
    Related
    ENSONIP00000053930.1, ENSONIT00000092567.1
    Conserved Domains (2) summary
    pfam02485
    Location:301 → 553
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:586 → 769
    Xylo_C; Xylosyltransferase C terminal
Nucleotide Protein
Heading Accession and Version

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