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galnt15 polypeptide N-acetylgalactosaminyltransferase 15 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100703000, updated on 21-Dec-2023

Summary

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Gene symbol
galnt15
Gene description
polypeptide N-acetylgalactosaminyltransferase 15
See related
Ensembl:ENSONIG00000004516
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in skin (RPKM 2.3), eye (RPKM 1.9) and 5 other tissues See more
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Genomic context

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See galnt15 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
10
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG22 NC_031985.2 (24894529..24899435)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG22 NC_031985.1 (8595655..8600223)

Linkage Group LG22 - NC_031985.2Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor 2 mRNA binding protein 3 Neighboring gene glycoprotein (transmembrane) nmb Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 8 Neighboring gene uncharacterized LOC112843614

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031985.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    24894529..24899435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003448896.5 → XP_003448944.2  polypeptide N-acetylgalactosaminyltransferase 15

    UniProtKB/TrEMBL
    I3J9Z5
    Related
    ENSONIP00000005685.1, ENSONIT00000005689.2
    Conserved Domains (4) summary
    cd02510
    Location:188 → 487
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:183 → 449
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:501 → 629
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:500 → 627
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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