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unm_hu7910 un-named hu7910 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100701393, updated on 8-Mar-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
See related
Ensembl:ENSONIG00000013429
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in heart (RPKM 10.1), testis (RPKM 5.5) and 7 other tissues See more
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
31
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG9 NC_031974.2 (1631747..1676176)
103 previous assembly ASM185804v2 (GCF_001858045.1) Unplaced Scaffold NW_017613887.1 (217903..262322)

Linkage Group LG9 - NC_031974.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 708 Neighboring gene zinc finger protein 729 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene clavesin-1 Neighboring gene RIO kinase 3 (yeast)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase; calponin homology domain-containing protein DDB_G0272472

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031974.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    1631747..1676176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019353560.2 → XP_019209105.1  calponin homology domain-containing protein DDB_G0272472 isoform X1

  2. XM_019353564.2 → XP_019209109.1  calponin homology domain-containing protein DDB_G0272472 isoform X6

    Related
    ENSONIP00000069697.1, ENSONIT00000066700.1

  3. XM_005468114.4 → XP_005468171.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

    UniProtKB/TrEMBL
    A0A669BI27
    Conserved Domains (5) summary
    pfam05279
    Location:43 → 268
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:371 → 397
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:540 → 693
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    pfam13428
    Location:294 → 333
    TPR_14; Tetratricopeptide repeat
    pfam13432
    Location:374 → 436
    TPR_16; Tetratricopeptide repeat

  4. XM_019353559.2 → XP_019209104.1  calponin homology domain-containing protein DDB_G0272472 isoform X1

  5. XM_019353561.2 → XP_019209106.1  calponin homology domain-containing protein DDB_G0272472 isoform X2

  6. XM_025910512.1 → XP_025766297.1  calponin homology domain-containing protein DDB_G0272472 isoform X4

    Conserved Domains (2) summary
    pfam05279
    Location:86 → 158
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    cl26511
    Location:204 → 885
    Neuromodulin_N; Gap junction protein N-terminal region

  7. XM_019353563.2 → XP_019209108.1  calponin homology domain-containing protein DDB_G0272472 isoform X5

  8. XM_019353562.2 → XP_019209107.1  calponin homology domain-containing protein DDB_G0272472 isoform X3

  9. XM_019353565.2 → XP_019209110.1  calponin homology domain-containing protein DDB_G0272472 isoform X7

    UniProtKB/TrEMBL
    A0A669DF13
    Related
    ENSONIP00000059272.1, ENSONIT00000034615.1

  10. XM_005468108.4 → XP_005468165.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    See identical proteins and their annotated locations for XP_005468165.1

    UniProtKB/TrEMBL
    A0A669BI27
    Conserved Domains (6) summary
    pfam05279
    Location:86 → 326
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:429 → 455
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:598 → 751
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    pfam13414
    Location:429 → 492
    TPR_11; TPR repeat
    pfam13428
    Location:352 → 391
    TPR_14; Tetratricopeptide repeat
    pfam13432
    Location:353 → 418
    TPR_16; Tetratricopeptide repeat

  11. XM_005468110.4 → XP_005468167.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

    UniProtKB/TrEMBL
    A0A669BI27, A0A669CE14
    Related
    ENSONIP00000046465.1, ENSONIT00000038350.1
    Conserved Domains (6) summary
    pfam05279
    Location:86 → 314
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:417 → 443
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:586 → 739
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    pfam13414
    Location:417 → 480
    TPR_11; TPR repeat
    pfam13428
    Location:340 → 379
    TPR_14; Tetratricopeptide repeat
    pfam13432
    Location:341 → 406
    TPR_16; Tetratricopeptide repeat

  12. XM_005468112.4 → XP_005468169.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

    UniProtKB/TrEMBL
    A0A669BI27
    Conserved Domains (5) summary
    pfam05279
    Location:86 → 356
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:387 → 413
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:556 → 709
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    pfam13428
    Location:310 → 349
    TPR_14; Tetratricopeptide repeat
    pfam13432
    Location:390 → 452
    TPR_16; Tetratricopeptide repeat

  13. XM_019353568.2 → XP_019209113.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

    UniProtKB/TrEMBL
    A0A669BI27, A0A669C370
    Related
    ENSONIP00000041061.1, ENSONIT00000074493.1

  14. XM_005468111.4 → XP_005468168.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    UniProtKB/TrEMBL
    A0A669BI27
    Related
    ENSONIP00000035171.1, ENSONIT00000048230.1
    Conserved Domains (5) summary
    pfam05279
    Location:86 → 311
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:414 → 440
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:583 → 736
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    pfam13428
    Location:337 → 376
    TPR_14; Tetratricopeptide repeat
    pfam13432
    Location:417 → 479
    TPR_16; Tetratricopeptide repeat

  15. XM_025910513.1 → XP_025766298.1  aspartyl/asparaginyl beta-hydroxylase isoform X14

    UniProtKB/TrEMBL
    A0A669BI27
    Conserved Domains (4) summary
    pfam05279
    Location:86 → 329
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:360 → 386
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:529 → 682
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    cl26002
    Location:276 → 459
    TPR_11; TPR repeat
Nucleotide Protein
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