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LOC100700717 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100700717, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100700717
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B
See related
Ensembl:ENSONIG00000029679
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in skin (RPKM 7.2), eye (RPKM 6.8) and 9 other tissues See more
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Genomic context

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See LOC100700717 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
4
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (23332804..23339734, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG5 NC_031970.1 (17293740..17300670, complement)

Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1b Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene uncharacterized LOC112846831 Neighboring gene uncharacterized LOC106097947

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    23332804..23339734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013269279.2 → XP_013124733.2  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

    UniProtKB/TrEMBL
    A0A669DIK8
    Related
    ENSONIP00000060444.1, ENSONIT00000082100.1
Nucleotide Protein
Heading Accession and Version

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