U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100698116 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100698116, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100698116
Gene description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
See related
Ensembl:ENSONIG00000007173
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in testis (RPKM 1.1), whole embryo (RPKM 0.5) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100698116 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) Unplaced Scaffold NW_020327438.1 (190419..213699, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) Unplaced Scaffold NW_017615978.1 (190419..213665, complement)

NW_020327438.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112844799 Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NW_020327438.1 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    190419..213699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019355557.2 → XP_019211102.2  LOW QUALITY PROTEIN: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1

    UniProtKB/TrEMBL
    I3JJK1
    Related
    ENSONIP00000009045.2, ENSONIT00000009050.2
    Conserved Domains (1) summary
    pfam00777
    Location:52 → 295
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases