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ogt.1 O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100697871, updated on 8-Mar-2024

Summary

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Gene symbol
ogt.1
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1
See related
Ensembl:ENSONIG00000017846
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
ogt
Expression
Ubiquitous expression in brain (RPKM 93.8), eye (RPKM 76.2) and 9 other tissues See more
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG2
Exon count:
23
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG2 NC_031966.2 (27681739..27694605)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG2 NC_031966.1 (25644330..25657215)

Linkage Group LG2 - NC_031966.2Genomic Context describing neighboring genes Neighboring gene ras homolog gene family, member Gd Neighboring gene FH2 domain containing 2 Neighboring gene germ cell nuclear acidic peptidase Neighboring gene olfactory receptor 2T3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Names
O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031966.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    27681739..27694605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005467883.4 → XP_005467940.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    UniProtKB/TrEMBL
    A0A669E2S6
    Conserved Domains (7) summary
    COG0457
    Location:204 → 461
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]
    cd15832
    Location:294 → 326
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:89 → 122
    TPR_1; Tetratricopeptide repeat
    pfam13431
    Location:213 → 246
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:556 → 1028
    Glyco_transf_41; Glycosyl transferase family 41
    cl24038
    Location:294 → 424
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  2. XM_003445888.5 → XP_003445936.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    UniProtKB/TrEMBL
    A0A669C1E1, I3KN03
    Related
    ENSONIP00000022498.1, ENSONIT00000022518.2
    Conserved Domains (7) summary
    COG0457
    Location:204 → 461
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]
    cd15832
    Location:294 → 326
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:89 → 122
    TPR_1; Tetratricopeptide repeat
    pfam13431
    Location:213 → 246
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:556 → 1024
    Glyco_transf_41; Glycosyl transferase family 41
    cl24038
    Location:294 → 424
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  3. XM_013271716.3 → XP_013127170.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3

    UniProtKB/TrEMBL
    A0A669C1E1
    Conserved Domains (7) summary
    COG0457
    Location:194 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    cd15832
    Location:284 → 316
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:79 → 112
    TPR_1; Tetratricopeptide repeat
    pfam13431
    Location:203 → 236
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:546 → 1018
    Glyco_transf_41; Glycosyl transferase family 41
    cl24038
    Location:284 → 414
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  4. XM_003445889.5 → XP_003445937.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X4

    UniProtKB/TrEMBL
    A0A669C1E1
    Conserved Domains (7) summary
    COG0457
    Location:194 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    cd15832
    Location:284 → 316
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:79 → 112
    TPR_1; Tetratricopeptide repeat
    pfam13431
    Location:203 → 236
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:546 → 1014
    Glyco_transf_41; Glycosyl transferase family 41
    cl24038
    Location:284 → 414
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  5. XM_025897326.1 → XP_025753111.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X5

    Related
    ENSONIP00000048879.1, ENSONIT00000086622.1
    Conserved Domains (3) summary
    sd00006
    Location:117 → 145
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:380 → 851
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:6 → 351
    TPR_11; TPR repeat
Nucleotide Protein
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