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hs3st3b1a heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1a [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100697618, updated on 8-Mar-2024

Summary

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Gene symbol
hs3st3b1a
Gene description
heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1a
See related
Ensembl:ENSONIG00000005445
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in eye (RPKM 22.2), liver (RPKM 16.2) and 4 other tissues See more
Orthologs
zebrafish all
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Genomic context

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See hs3st3b1a in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
3
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG4 NC_031969.2 (22263999..22274675, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG4 NC_031969.1 (14534545..14545335)

Linkage Group LG4 - NC_031969.2Genomic Context describing neighboring genes Neighboring gene CDC42 effector protein (Rho GTPase binding) 4a Neighboring gene peripheral myelin protein 22a Neighboring gene Rho GTPase activating protein 44a Neighboring gene ring finger protein 222

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 3B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031969.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    22263999..22274675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005454979.4 → XP_005455036.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1 isoform X2

    Conserved Domains (1) summary
    pfam00685
    Location:117 → 287
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_003450111.5 → XP_003450159.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1 isoform X1

    UniProtKB/TrEMBL
    I3JD99
    Related
    ENSONIP00000006839.1, ENSONIT00000006844.2
    Conserved Domains (1) summary
    pfam00685
    Location:117 → 354
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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