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utp11 UTP11 small subunit processome component [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100696019, updated on 8-Mar-2024

Summary

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Gene symbol
utp11
Gene description
UTP11 small subunit processome component
See related
Ensembl:ENSONIG00000033069
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See utp11 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
8
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG11 NC_031976.2 (27168118..27171277)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG11 NC_031976.1 (12567761..12570918, complement)

Linkage Group LG11 - NC_031976.2Genomic Context describing neighboring genes Neighboring gene R-spondin 1 Neighboring gene four and a half LIM domains 3a Neighboring gene POU class 3 homeobox 1 Neighboring gene uncharacterized LOC102078505 Neighboring gene uncharacterized LOC102078438

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable U3 small nucleolar RNA-associated protein 11
Names
UTP11, small subunit processome component homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031976.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    27168118..27171277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003450519.4 → XP_003450567.1  probable U3 small nucleolar RNA-associated protein 11

    UniProtKB/TrEMBL
    A0A669EBP6
    Related
    ENSONIP00000068974.1, ENSONIT00000040464.1
    Conserved Domains (1) summary
    pfam03998
    Location:12 → 254
    Utp11; Utp11 protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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