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LOC100695310 carbohydrate sulfotransferase 11 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100695310, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100695310
Gene description
carbohydrate sulfotransferase 11
See related
Ensembl:ENSONIG00000009167
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See LOC100695310 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
4
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG20 NC_031984.2 (30052794..30073478)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG20 NC_031984.1 (30594298..30612099)

Linkage Group LG20 - NC_031984.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112843337 Neighboring gene uncharacterized LOC106098512 Neighboring gene solute carrier family 41 member 3 Neighboring gene uncharacterized LOC112843226

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031984.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    30052794..30073478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005454082.4 → XP_005454139.1  carbohydrate sulfotransferase 11 isoform X1

    UniProtKB/TrEMBL
    I3JRN2
    Related
    ENSONIP00000011526.2, ENSONIT00000011535.2
    Conserved Domains (1) summary
    pfam03567
    Location:101 → 331
    Sulfotransfer_2; Sulfotransferase family

  2. XM_005454083.4 → XP_005454140.1  carbohydrate sulfotransferase 11 isoform X3

    Conserved Domains (1) summary
    pfam03567
    Location:100 → 330
    Sulfotransfer_2; Sulfotransferase family

  3. XM_013273752.3 → XP_013129206.1  carbohydrate sulfotransferase 11 isoform X2

    Conserved Domains (1) summary
    pfam03567
    Location:100 → 330
    Sulfotransfer_2; Sulfotransferase family

  4. XM_019350014.2 → XP_019205559.1  carbohydrate sulfotransferase 11 isoform X4

    Conserved Domains (1) summary
    pfam03567
    Location:99 → 329
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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