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sgca sarcoglycan, alpha [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100694800, updated on 8-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSONIG00000007963
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in skeletal muscle (RPKM 122.0), heart (RPKM 39.9) and 1 other tissue See more
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
11
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG8 NC_031973.2 (7577139..7581620, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG8 NC_031973.1 (2293785..2298266)

Linkage Group LG8 - NC_031973.2Genomic Context describing neighboring genes Neighboring gene putative all-trans-retinol 13,14-reductase Neighboring gene collagen, type I, alpha 1b Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene PR domain containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031973.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    7577139..7581620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005458178.1 → XP_005458235.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    I3JMD5
    Related
    ENSONIP00000010029.1, ENSONIT00000010038.2
    Conserved Domains (1) summary
    pfam05510
    Location:24 → 348
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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