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LOC100694320 C-terminal binding protein 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100694320, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100694320
Gene description
C-terminal binding protein 1
See related
Ensembl:ENSONIG00000001046
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
ctbp1
Expression
Broad expression in skin (RPKM 19.6), whole embryo (RPKM 17.8) and 7 other tissues See more
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Genomic context

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See LOC100694320 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
12
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG2 NC_031966.2 (14360318..14387031)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG2 NC_031966.1 (14271955..14298651)

Linkage Group LG2 - NC_031966.2Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A0 Neighboring gene heterogeneous nuclear ribonucleoprotein A0 Neighboring gene macrophage erythroblast attacher, E3 ubiquitin ligase Neighboring gene transmembrane emp24 domain-containing protein 11 Neighboring gene spondin 2b, extracellular matrix protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-terminal-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031966.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    14360318..14387031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005467279.4 → XP_005467336.3  C-terminal-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A669BZP9
    Conserved Domains (1) summary
    cd05299
    Location:46 → 364
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  2. XM_005467280.4 → XP_005467337.2  C-terminal-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A669B1I0
    Related
    ENSONIP00000040833.1, ENSONIT00000093638.1
    Conserved Domains (2) summary
    COG0111
    Location:44 → 343
    SerA; Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism, General function prediction only]
    cd05299
    Location:17 → 335
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  3. XM_005467281.4 → XP_005467338.1  C-terminal-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A669B1I0
    Conserved Domains (1) summary
    cd05299
    Location:28 → 346
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  4. XM_003443436.5 → XP_003443484.1  C-terminal-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A669B1I0, A0A669BKA2
    Related
    ENSONIP00000035842.1, ENSONIT00000034253.1
    Conserved Domains (1) summary
    cd05299
    Location:28 → 346
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
Nucleotide Protein
Heading Accession and Version

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