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LOC100694282 heparan sulfate glucosamine 3-O-sulfotransferase 6 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100694282, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100694282
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 6
See related
Ensembl:ENSONIG00000017208
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in whole embryo (RPKM 1.5), kidney (RPKM 0.4) and 2 other tissues See more
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Genomic context

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Location:
chromosome: LG4
Exon count:
2
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG4 NC_031969.2 (18362210..18376667)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG4 NC_031969.1 (23536526..23550970)

Linkage Group LG4 - NC_031969.2Genomic Context describing neighboring genes Neighboring gene methionine-R-sulfoxide reductase B1-A-like Neighboring gene methionine sulfoxide reductase B1a Neighboring gene fumarylacetoacetate hydrolase domain containing 1 Neighboring gene hydroxyacylglutathione hydrolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031969.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    18362210..18376667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003456348.5 → XP_003456396.1  heparan sulfate glucosamine 3-O-sulfotransferase 6

    UniProtKB/TrEMBL
    I3KKR3
    Related
    ENSONIP00000021708.1, ENSONIT00000021727.2
    Conserved Domains (1) summary
    pfam00685
    Location:118 → 354
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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