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gcnt4 glucosaminyl (N-acetyl) transferase 4 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100694182, updated on 21-Dec-2023

Summary

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Gene symbol
gcnt4
Gene description
glucosaminyl (N-acetyl) transferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See gcnt4 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
6
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (12151188..12156533, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (3862760..3868179)

Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene LIM homeobox 5 Neighboring gene uncharacterized LOC106099038 Neighboring gene 3-hydroxy-3-methylglutaryl-coenzyme A reductase Neighboring gene collagen type IV alpha-3-binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4
Names
glucosaminyl (N-acetyl) transferase 4, core 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    12151188..12156533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005459688.4 → XP_005459745.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    See identical proteins and their annotated locations for XP_005459745.1

    UniProtKB/TrEMBL
    I3KE70
    Conserved Domains (1) summary
    pfam02485
    Location:118 → 386
    Branch; Core-2/I-Branching enzyme

  2. XM_013277526.3 → XP_013132980.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    I3KE70
    Conserved Domains (1) summary
    pfam02485
    Location:118 → 386
    Branch; Core-2/I-Branching enzyme

  3. XM_013277525.3 → XP_013132979.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    I3KE70
    Conserved Domains (1) summary
    pfam02485
    Location:118 → 386
    Branch; Core-2/I-Branching enzyme

  4. XM_005459687.4 → XP_005459744.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    See identical proteins and their annotated locations for XP_005459744.1

    UniProtKB/TrEMBL
    I3KE70
    Conserved Domains (1) summary
    pfam02485
    Location:118 → 386
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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