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LOC100692243 torsin-1A-interacting protein 2 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100692243, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100692243
Gene description
torsin-1A-interacting protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Ubiquitous expression in testis (RPKM 8.9), ovary (RPKM 8.7) and 9 other tissues See more
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Genomic context

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See LOC100692243 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
8
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG23 NC_031986.2 (42947430..42958926)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG23 NC_031986.1 (2696719..2708259, complement)

Linkage Group LG23 - NC_031986.2Genomic Context describing neighboring genes Neighboring gene activating transcription factor 6 Neighboring gene olfactomedin-like 2Ba Neighboring gene torsin-1A-interacting protein 2 Neighboring gene uncharacterized LOC102079386 Neighboring gene chemokine XC receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031986.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    42947430..42958926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019351561.2 → XP_019207106.1  torsin-1A-interacting protein 2 isoform X1

    Conserved Domains (1) summary
    pfam05609
    Location:318 → 522
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_019351562.2 → XP_019207107.1  torsin-1A-interacting protein 2 isoform X2

  3. XM_025903426.1 → XP_025759211.1  torsin-1A-interacting protein 2 isoform X3

    Conserved Domains (1) summary
    pfam05609
    Location:274 → 487
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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