Format

Send to:

Choose Destination

eri1 exoribonuclease 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100690203, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
eri1
Gene description
exoribonuclease 1
See related
Ensembl:ENSONIG00000017852
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See eri1 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
8
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG17 NC_031981.2 (17385988..17389596)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG17 NC_031981.1 (18990659..18994378)

Linkage Group LG17 - NC_031981.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109195069 Neighboring gene transmembrane and coiled-coil domain family 3 Neighboring gene laminin, beta 1b Neighboring gene single-stranded DNA binding protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
3'-5' exoribonuclease 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031981.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    17385988..17389596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025899499.1 → XP_025755284.1  3'-5' exoribonuclease 1 isoform X2

    Conserved Domains (2) summary
    cd06133
    Location:54 → 234
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
    pfam02037
    Location:1 → 31
    SAP; SAP domain

  2. XM_003448099.5 → XP_003448147.1  3'-5' exoribonuclease 1 isoform X1

    UniProtKB/TrEMBL
    I3KN10
    Related
    ENSONIP00000022505.1, ENSONIT00000022525.2
    Conserved Domains (2) summary
    cd06133
    Location:122 → 302
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
    pfam02037
    Location:66 → 100
    SAP; SAP domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.