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B4galt4 beta-1,4-galactosyltransferase 4 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100689435, updated on 8-Mar-2024

Summary

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Gene symbol
B4galt4
Gene description
beta-1,4-galactosyltransferase 4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
b4Gal-T4
Orthologs
human mouse all
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Genomic context

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See B4galt4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614660.1 (429886..461291)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (51396493..51414092, complement)

NW_003614660.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 39A Neighboring gene Rho GTPase activating protein 31 Neighboring gene uroplakin 1B Neighboring gene testis expressed 55

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A mutation causing a reduced level of expression of six beta4-galactosyltransferase genes is the basis of the Lec19 CHO glycosylation mutant. Lee J, et al. Biochemistry, 2003 Oct 28. PMID 14567696
  2. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 4
Names
Beta-1,4-GalTase 4
Beta4Gal-T4
N-acetyllactosamine synthase
UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4
UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 4
beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase
lactotriaosylceramide beta-1,4-galactosyltransferase
nal synthase
NP_001233624.1
XP_007647945.1
XP_007647946.1
XP_007647947.1
XP_007647949.1
XP_016834522.1
XP_016834525.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246695.1 → NP_001233624.1  beta-1,4-galactosyltransferase 4

    See identical proteins and their annotated locations for NP_001233624.1

    Status: PROVISIONAL

    Source sequence(s)
    AY117538
    UniProtKB/Swiss-Prot
    Q80WN7
    UniProtKB/TrEMBL
    A0A061I5N1, G3I1K4
    Conserved Domains (1) summary
    cd00899
    Location:122 → 339
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614660.1 Reference CriGri_1.0 Primary Assembly

    Range
    429886..461291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007649755.4 → XP_007647945.1  beta-1,4-galactosyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A061I5N1
    Conserved Domains (1) summary
    cd00899
    Location:249 → 466
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_016979036.3 → XP_016834525.1  beta-1,4-galactosyltransferase 4 isoform X3

    UniProtKB/Swiss-Prot
    Q80WN7
    UniProtKB/TrEMBL
    A0A061I5N1, G3I1K4
    Conserved Domains (1) summary
    cd00899
    Location:122 → 339
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  3. XM_007649759.4 → XP_007647949.1  beta-1,4-galactosyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A061I5N1
    Conserved Domains (1) summary
    cd00899
    Location:189 → 406
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  4. XM_007649757.4 → XP_007647947.1  beta-1,4-galactosyltransferase 4 isoform X3

    See identical proteins and their annotated locations for XP_007647947.1

    UniProtKB/Swiss-Prot
    Q80WN7
    UniProtKB/TrEMBL
    A0A061I5N1, G3I1K4
    Conserved Domains (1) summary
    cd00899
    Location:122 → 339
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  5. XM_016979033.3 → XP_016834522.1  beta-1,4-galactosyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A061I5N1
    Conserved Domains (1) summary
    cd00899
    Location:189 → 406
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  6. XM_007649756.4 → XP_007647946.1  beta-1,4-galactosyltransferase 4 isoform X3

    See identical proteins and their annotated locations for XP_007647946.1

    UniProtKB/Swiss-Prot
    Q80WN7
    UniProtKB/TrEMBL
    A0A061I5N1, G3I1K4
    Conserved Domains (1) summary
    cd00899
    Location:122 → 339
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    51396493..51414092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q80WN7.1 GenPept UniProtKB/Swiss-Prot:Q80WN7

Gene LinkOut

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