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TMED3 transmembrane p24 trafficking protein 3 [ Canis lupus familiaris (dog) ]

Gene ID: 100685718, updated on 17-Aug-2024

Summary

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Official Symbol
TMED3provided by VGNC
Official Full Name
transmembrane p24 trafficking protein 3provided by VGNC
Primary source
VGNC:VGNC:47438
See related
Ensembl:ENSCAFG00845005060
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TMED3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (58267780..58274675, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (60490826..60497703, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (58321136..58328013, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (57764729..57771616, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (57972225..57979103, complement)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111095240 Neighboring gene uncharacterized LOC111095241 Neighboring gene membrane integral NOTCH2 associated receptor 1 Neighboring gene ankyrin repeat domain 34C Neighboring gene uncharacterized LOC102156518 Neighboring gene microRNA mir-184

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane emp24 domain-containing protein 3
Names
transmembrane emp24 protein transport domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    58267780..58274675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038661540.1 → XP_038517468.1  transmembrane emp24 domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KP29, A0A8C0RV14, A0A8I3MWL0, A0A8P0TN52
    Conserved Domains (1) summary
    pfam01105
    Location:39 → 216
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

  2. XM_038661539.1 → XP_038517467.1  transmembrane emp24 domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KP29, A0A8C0RV14, A0A8I3MWL0, A0A8P0TN52
    Related
    ENSCAFP00845007152.1, ENSCAFT00845009068.1
    Conserved Domains (1) summary
    pfam01105
    Location:39 → 216
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    57764729..57771616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038472089.1 → XP_038328017.1  transmembrane emp24 domain-containing protein 3 isoform X1

    Conserved Domains (1) summary
    pfam01105
    Location:39 → 216
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

  2. XM_038472088.1 → XP_038328016.1  transmembrane emp24 domain-containing protein 3 isoform X2

    Conserved Domains (1) summary
    pfam01105
    Location:39 → 216
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    57972225..57979103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038597359.1 → XP_038453287.1  transmembrane emp24 domain-containing protein 3 isoform X2

    Conserved Domains (1) summary
    pfam01105
    Location:39 → 216
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    58321136..58328013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038533030.1 → XP_038388958.1  transmembrane emp24 domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KP29, A0A8C0RV14, A0A8I3MWL0, A0A8P0TN52
    Conserved Domains (1) summary
    pfam01105
    Location:39 → 216
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    60490826..60497703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005618431.2 → XP_005618488.2  transmembrane emp24 domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KP29, A0A8C0RV14, A0A8I3MWL0, A0A8P0TN52
    Conserved Domains (1) summary
    pfam01105
    Location:39 → 216
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD
Nucleotide Protein
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