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GSC goosecoid homeobox [ Canis lupus familiaris (dog) ]

Gene ID: 100683589, updated on 17-Aug-2024

Summary

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Official Symbol
GSCprovided by VGNC
Official Full Name
goosecoid homeoboxprovided by VGNC
Primary source
VGNC:VGNC:41525
See related
Ensembl:ENSCAFG00845003185
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See GSC in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (63951494..63974354, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (63260674..63283571, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (64009439..64032367, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (63626364..63649232, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (63678390..63701298, complement)

Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene serpin family A member 5 Neighboring gene uncharacterized LOC111097150 Neighboring gene serpin family A member 3 Neighboring gene uncharacterized LOC111097151 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC102154111

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein goosecoid

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051812.1 Reference ROS_Cfam_1.0

    Range
    63951494..63974354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038674548.1 → XP_038530476.1  homeobox protein goosecoid isoform X2

    UniProtKB/TrEMBL
    A0A8C0MSH4, A0A8I3RR68
    Related
    ENSCAFP00845004440.1, ENSCAFT00845005598.1
    Conserved Domains (2) summary
    COG5576
    Location:156 → 276
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  2. XM_038674547.1 → XP_038530475.1  homeobox protein goosecoid isoform X1

    UniProtKB/TrEMBL
    A0A8C0MSL0
    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  3. XM_038674549.1 → XP_038530477.1  homeobox protein goosecoid isoform X3

    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049268.1 Alternate UMICH_Zoey_3.1

    Range
    63626364..63649232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038484131.1 → XP_038340059.1  homeobox protein goosecoid isoform X2

    Conserved Domains (2) summary
    COG5576
    Location:156 → 276
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  2. XM_038484130.1 → XP_038340058.1  homeobox protein goosecoid isoform X1

    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  3. XM_038484132.1 → XP_038340060.1  homeobox protein goosecoid isoform X3

    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

    Range
    63678390..63701298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038609738.1 → XP_038465666.1  homeobox protein goosecoid isoform X2

    Conserved Domains (2) summary
    COG5576
    Location:156 → 276
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  2. XM_038609736.1 → XP_038465664.1  homeobox protein goosecoid isoform X1

    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  3. XM_038609739.1 → XP_038465667.1  homeobox protein goosecoid isoform X3

    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

    Range
    64009439..64032367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038545640.1 → XP_038401568.1  homeobox protein goosecoid isoform X2

    UniProtKB/TrEMBL
    A0A8P0SLM1
    Conserved Domains (2) summary
    COG5576
    Location:156 → 276
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  2. XM_038545639.1 → XP_038401567.1  homeobox protein goosecoid isoform X1

    UniProtKB/TrEMBL
    A0A8C0Q5S3
    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  3. XM_038545641.1 → XP_038401569.1  homeobox protein goosecoid isoform X3

    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    63260674..63283571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005623927.3 → XP_005623984.3  homeobox protein goosecoid isoform X2

    UniProtKB/TrEMBL
    A0A8P0SLM1
    Conserved Domains (2) summary
    COG5576
    Location:156 → 276
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  2. XM_038594523.1 → XP_038450451.1  homeobox protein goosecoid isoform X1

    UniProtKB/TrEMBL
    A0A8C0Q5S3
    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain

  3. XM_038594544.1 → XP_038450472.1  homeobox protein goosecoid isoform X3

    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain
Nucleotide Protein
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