U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SLIT1 slit guidance ligand 1 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100681912, updated on 30-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
SLIT1
Gene description
slit guidance ligand 1
See related
Ensembl:ENSOANG00000041489
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SLIT1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
37
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 3 NC_041730.1 (124989037..125221505)

Chromosome 3 - NC_041730.1Genomic Context describing neighboring genes Neighboring gene GSK-3-binding protein FRAT2-like Neighboring gene Rho GTPase activating protein 19 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene uncharacterized LOC114810160 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene ligand dependent nuclear receptor corepressor Neighboring gene small nucleolar RNA SNORA7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_041730.1 Chromosome 3 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Roundabout binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
slit homolog 1 protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041730.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    124989037..125221505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029060451.2 → XP_028916284.1  slit homolog 1 protein

    UniProtKB/TrEMBL
    A0A6I8MYS3
    Related
    ENSOANP00000047208.1
    Conserved Domains (7) summary
    TIGR00864
    Location:640 → 726
    PCC; polycystin cation channel protein
    smart00013
    Location:29 → 60
    LRRNT; Leucine rich repeat N-terminal domain
    smart00282
    Location:1185 → 1318
    LamG; Laminin G domain
    COG4886
    Location:59 → 215
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00054
    Location:1079 → 1115
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    sd00033
    Location:39 → 58
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:155 → 213
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.