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SOAT1 sterol O-acyltransferase 1 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100666457, updated on 11-Apr-2024

Summary

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Gene symbol
SOAT1
Gene description
sterol O-acyltransferase 1
See related
EnsemblRapid:ENSLAFG00000007472
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See SOAT1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 25 NC_087366.1 (23574495..23650296, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573436.1 (21510855..21546158, complement)

Chromosome 25 - NC_087366.1Genomic Context describing neighboring genes Neighboring gene NPHS2 stomatin family member, podocin Neighboring gene axonemal dynein light chain domain containing 1 Neighboring gene large ribosomal subunit protein eL36-like Neighboring gene ABL proto-oncogene 2, non-receptor tyrosine kinase Neighboring gene small ribosomal subunit protein uS5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty-acyl-CoA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol O-acyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087366.1 Reference mLoxAfr1.hap2

    Range
    23574495..23650296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064276577.1 → XP_064132647.1  sterol O-acyltransferase 1 isoform X2

    Related
    ENSLAFP00000040127.1, ENSLAFT00000043183.1

  2. XM_064276576.1 → XP_064132646.1  sterol O-acyltransferase 1 isoform X1

    Related
    ENSLAFP00000035192.1, ENSLAFT00000044280.1

  3. XM_064276578.1 → XP_064132648.1  sterol O-acyltransferase 1 isoform X3

    Related
    ENSLAFP00000043806.1, ENSLAFT00000039086.1
Nucleotide Protein
Heading Accession and Version

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