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SLC35F5 solute carrier family 35 member F5 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100664808, updated on 11-Apr-2024

Summary

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Gene symbol
SLC35F5
Gene description
solute carrier family 35 member F5
See related
EnsemblRapid:ENSLAFG00000006974
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See SLC35F5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 6 NC_087347.1 (117780636..117842807, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573423.1 (98373355..98424983, complement)

Chromosome 6 - NC_087347.1Genomic Context describing neighboring genes Neighboring gene NCK associated protein 5 Neighboring gene LY6/PLAUR domain containing 1 Neighboring gene G protein-coupled receptor 39 Neighboring gene suppressor of SWI4 1 homolog Neighboring gene actin related protein 3 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 35 member F5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087347.1 Reference mLoxAfr1.hap2

    Range
    117780636..117842807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010586353.3 → XP_010584655.1  solute carrier family 35 member F5 isoform X3

    Related
    ENSLAFP00000030734.1, ENSLAFT00000046661.1
    Conserved Domains (2) summary
    COG0697
    Location:198 → 423
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    pfam00892
    Location:280 → 423
    EamA; EamA-like transporter family

  2. XM_003405870.4 → XP_003405918.1  solute carrier family 35 member F5 isoform X1

    See identical proteins and their annotated locations for XP_003405918.1

    UniProtKB/TrEMBL
    G3SZ84
    Conserved Domains (2) summary
    COG0697
    Location:243 → 471
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    pfam00892
    Location:328 → 471
    EamA; EamA-like transporter family

  3. XM_010586351.3 → XP_010584653.1  solute carrier family 35 member F5 isoform X1

    See identical proteins and their annotated locations for XP_010584653.1

    UniProtKB/TrEMBL
    G3SZ84
    Conserved Domains (2) summary
    COG0697
    Location:243 → 471
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    pfam00892
    Location:328 → 471
    EamA; EamA-like transporter family

  4. XM_023543024.2 → XP_023398792.1  solute carrier family 35 member F5 isoform X2

    Conserved Domains (1) summary
    COG0697
    Location:200 → 425
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

  5. XM_010586352.3 → XP_010584654.1  solute carrier family 35 member F5 isoform X1

    See identical proteins and their annotated locations for XP_010584654.1

    UniProtKB/TrEMBL
    G3SZ84
    Related
    ENSLAFP00000005860.3, ENSLAFT00000006975.4
    Conserved Domains (2) summary
    COG0697
    Location:243 → 471
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    pfam00892
    Location:328 → 471
    EamA; EamA-like transporter family

  6. XM_064287276.1 → XP_064143346.1  solute carrier family 35 member F5 isoform X4

RNA

  1. XR_010322338.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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