U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHAT choline O-acetyltransferase [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100662470, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
CHAT
Gene description
choline O-acetyltransferase
See related
EnsemblRapid:ENSLAFG00000015152
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CHAT in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 16 NC_087357.1 (82469978..82533481, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573430.1 (66130729..66194803, complement)

Chromosome 16 - NC_087357.1Genomic Context describing neighboring genes Neighboring gene oxoglutarate dehydrogenase L Neighboring gene chromosome 16 C10orf53 homolog Neighboring gene solute carrier family 18 member A3 Neighboring gene ERCC excision repair 6, chromatin remodeling factor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetylcholine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuromuscular synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
choline O-acetyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087357.1 Reference mLoxAfr1.hap2

    Range
    82469978..82533481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023547168.2 → XP_023402936.1  choline O-acetyltransferase

    UniProtKB/TrEMBL
    G3TEK9
    Related
    ENSLAFP00000012690.4, ENSLAFT00000015156.4
    Conserved Domains (1) summary
    pfam00755
    Location:24 → 608
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.