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LCT lactase [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100661599, updated on 11-Apr-2024

Summary

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Gene symbol
LCT
Gene description
lactase
See related
EnsemblRapid:ENSLAFG00000009081
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See LCT in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 6 NC_087347.1 (113771000..113819996)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573423.1 (94358779..94408334)

Chromosome 6 - NC_087347.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene small ribosomal subunit protein uS10-like Neighboring gene minichromosome maintenance complex component 6 Neighboring gene UBX domain protein 4 Neighboring gene R3H domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactase/phlorizin hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087347.1 Reference mLoxAfr1.hap2

    Range
    113771000..113819996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003405859.3 → XP_003405907.3  lactase/phlorizin hydrolase

    Related
    ENSLAFP00000007618.4, ENSLAFT00000009084.4
Nucleotide Protein
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Gene LinkOut

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