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UXS1 UDP-glucuronate decarboxylase 1 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100660689, updated on 11-Apr-2024

Summary

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Gene symbol
UXS1
Gene description
UDP-glucuronate decarboxylase 1
See related
EnsemblRapid:ENSLAFG00000031535
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See UXS1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 15 NC_087356.1 (11468893..11579447, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573447.1 (8473120..8583753, complement)

Chromosome 15 - NC_087356.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS8-like Neighboring gene small ribosomal subunit protein eS26-like Neighboring gene ECRG4 augurin precursor Neighboring gene uncharacterized LOC135227768 Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 2 Neighboring gene transfer RNA alanine (anticodon UGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables UDP-glucuronate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronic acid decarboxylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087356.1 Reference mLoxAfr1.hap2

    Range
    11468893..11579447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003413615.3 → XP_003413663.1  UDP-glucuronic acid decarboxylase 1 isoform X2

    UniProtKB/TrEMBL
    G3U6I2
    Conserved Domains (3) summary
    cd05230
    Location:89 → 392
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    COG0451
    Location:89 → 396
    WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
    pfam11803
    Location:4 → 78
    UXS1_N; UDP-glucuronate decarboxylase N-terminal

  2. XM_010593578.2 → XP_010591880.1  UDP-glucuronic acid decarboxylase 1 isoform X1

    Related
    ENSLAFP00000023440.2, ENSLAFT00000029396.2
    Conserved Domains (3) summary
    cd05230
    Location:94 → 397
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    COG0451
    Location:94 → 401
    WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
    pfam11803
    Location:4 → 83
    UXS1_N; UDP-glucuronate decarboxylase N-terminal

  3. XM_023552630.2 → XP_023408398.1  UDP-glucuronic acid decarboxylase 1 isoform X5

    Conserved Domains (1) summary
    cd05230
    Location:1 → 284
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  4. XM_023552625.2 → XP_023408393.1  UDP-glucuronic acid decarboxylase 1 isoform X3

    Conserved Domains (1) summary
    cd05230
    Location:43 → 346
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  5. XM_023552632.2 → XP_023408400.1  UDP-glucuronic acid decarboxylase 1 isoform X5

    Conserved Domains (1) summary
    cd05230
    Location:1 → 284
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  6. XM_023552623.2 → XP_023408391.1  UDP-glucuronic acid decarboxylase 1 isoform X3

    Conserved Domains (1) summary
    cd05230
    Location:43 → 346
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  7. XM_023552626.2 → XP_023408394.1  UDP-glucuronic acid decarboxylase 1 isoform X3

    Conserved Domains (1) summary
    cd05230
    Location:43 → 346
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  8. XM_023552628.2 → XP_023408396.1  UDP-glucuronic acid decarboxylase 1 isoform X3

    Conserved Domains (1) summary
    cd05230
    Location:43 → 346
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  9. XM_064268584.1 → XP_064124654.1  UDP-glucuronic acid decarboxylase 1 isoform X3

  10. XM_023552627.2 → XP_023408395.1  UDP-glucuronic acid decarboxylase 1 isoform X3

    Conserved Domains (1) summary
    cd05230
    Location:43 → 346
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  11. XM_023552635.2 → XP_023408403.1  UDP-glucuronic acid decarboxylase 1 isoform X5

    Conserved Domains (1) summary
    cd05230
    Location:1 → 284
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  12. XM_023552629.2 → XP_023408397.1  UDP-glucuronic acid decarboxylase 1 isoform X3

    Conserved Domains (1) summary
    cd05230
    Location:43 → 346
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  13. XM_023552634.2 → XP_023408402.1  UDP-glucuronic acid decarboxylase 1 isoform X5

    Conserved Domains (1) summary
    cd05230
    Location:1 → 284
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  14. XM_064268585.1 → XP_064124655.1  UDP-glucuronic acid decarboxylase 1 isoform X4

Nucleotide Protein
Heading Accession and Version

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