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SMPDL3A sphingomyelin phosphodiesterase acid like 3A [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100657399, updated on 11-Apr-2024

Summary

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Gene symbol
SMPDL3A
Gene description
sphingomyelin phosphodiesterase acid like 3A
See related
EnsemblRapid:ENSLAFG00000010744
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See SMPDL3A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 1 NC_087342.1 (188348857..188382023)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573420.1 (39135059..39168279, complement)

Chromosome 1 - NC_087342.1Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor 2 Neighboring gene serine incorporator 1 Neighboring gene fatty acid binding protein 7 Neighboring gene uncharacterized LOC111747630 Neighboring gene CCR4-NOT transcription complex subunit 11-like Neighboring gene clavesin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087342.1 Reference mLoxAfr1.hap2

    Range
    188348857..188382023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023538683.2 → XP_023394451.2  acid sphingomyelinase-like phosphodiesterase 3a isoform X2

  2. XM_010595307.3 → XP_010593609.2  acid sphingomyelinase-like phosphodiesterase 3a isoform X1

    Related
    ENSLAFP00000008991.4, ENSLAFT00000010745.4
Nucleotide Protein
Heading Accession and Version

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