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CANX calnexin [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100653607, updated on 11-Apr-2024

Summary

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Gene symbol
CANX
Gene description
calnexin
See related
EnsemblRapid:ENSLAFG00000000512
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See CANX in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 2 NC_087343.1 (201147037..201184192)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573421.1 (106151903..106189053)

Chromosome 2 - NC_087343.1Genomic Context describing neighboring genes Neighboring gene RUN and FYVE domain containing 1 Neighboring gene heterogeneous nuclear ribonucleoprotein H1 Neighboring gene chibby family member 3 Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene leukotriene C4 synthase Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calnexin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087343.1 Reference mLoxAfr1.hap2

    Range
    201147037..201184192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003404702.4 → XP_003404750.1  calnexin

    UniProtKB/TrEMBL
    G3SLU9, G3U0T3
    Related
    ENSLAFP00000021441.2, ENSLAFT00000036117.2
    Conserved Domains (1) summary
    pfam00262
    Location:72 → 441
    Calreticulin; Calreticulin family
Nucleotide Protein
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Gene LinkOut

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