U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

acta2.S actin, alpha 2, smooth muscle, aorta S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100653490, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
acta2.S
Official Full Name
actin, alpha 2, smooth muscle, aorta S homeolog
Primary source
Xenbase:XB-GENE-17341424
Locus tag
XELAEV_18036758mg
See related
EnsemblRapid:ENSXLAG00005018935
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sma; ASMA; aat6; a-sma; actsa; mymy5; SMactin; sm-actin; alpha-actin
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (5422064..5429035)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (5441587..5448657)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene cholesterol 25-hydroxylase S homeolog Neighboring gene Fas cell surface death receptor S homeolog Neighboring gene STAM binding protein like 1 S homeolog Neighboring gene ankyrin repeat domain 22 S homeolog Neighboring gene small nucleolar RNA U85

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Organization and developmental expression of an amphibian vascular smooth muscle alpha-actin gene. Warkman AS, et al. Dev Dyn, 2005 Aug. PMID 15965984
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within mesenchyme migration ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of gene expression ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cell body ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  
located_in filopodium ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in lamellipodium ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

Go to the top of the page Help
Preferred Names
actin, alpha 2, smooth muscle, aorta S homeolog
Names
SM actin
alpha smooth muscle actin
alpha-SM-actin
smooth muscle alpha actin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246302.1 → NP_001233231.1  actin, alpha 2, smooth muscle, aorta S homeolog

    See identical proteins and their annotated locations for NP_001233231.1

    Status: PROVISIONAL

    Source sequence(s)
    AY986490
    UniProtKB/Swiss-Prot
    P53506
    UniProtKB/TrEMBL
    Q52QH5
    Conserved Domains (2) summary
    PTZ00281
    Location:4 → 377
    PTZ00281; actin; Provisional
    smart00268
    Location:7 → 377
    ACTIN; Actin

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    5422064..5429035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018226776.2 → XP_018082265.1  actin, alpha 2, smooth muscle, aorta S homeolog isoform X1

    UniProtKB/Swiss-Prot
    P53506
    UniProtKB/TrEMBL
    A0A974CB04, Q6NS10
    Related
    ENSXLAP00005055825.1, ENSXLAT00005057054.1
    Conserved Domains (1) summary
    PTZ00281
    Location:4 → 377
    PTZ00281; actin; Provisional
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials