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SPATA8-AS1 SPATA8 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 100652749, updated on 10-Oct-2023

Summary

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Official Symbol
SPATA8-AS1provided by HGNC
Official Full Name
SPATA8 antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:48627
See related
Ensembl:ENSG00000259282 AllianceGenome:HGNC:48627
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.1) See more
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Genomic context

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See SPATA8-AS1 in Genome Data Viewer
Location:
15q26.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (96772005..96783337, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (94536639..94547970, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (97315235..97326567, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371002 Neighboring gene NANOG hESC enhancer GRCh37_chr15:97246263-97246873 Neighboring gene family with sequence similarity 149, member B2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:97339270-97340469 Neighboring gene spermatogenesis associated 8 Neighboring gene RN7SK pseudogene 181

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102753.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AA812851, HY049461, HY244176
    Related
    ENST00000558722.1

  2. NR_102754.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two 5' exons, contains an alternate 5' exon, and uses an alternate splice site at the 3' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AA812851, AC027004
    Related
    ENST00000560888.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    96772005..96783337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    94536639..94547970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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