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Scgdelta sarcoglycan delta [ Bombus terrestris (buff-tailed bumblebee) ]

Gene ID: 100643642, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSBTSG00005028460
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus terrestris
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
103 current iyBomTerr1.2 (GCF_910591885.1) 2 NC_063270.1 (15528289..15714497)
102 previous assembly Bter_1.0 (GCF_000214255.1) Linkage Group LG B02 NC_015763.1 (9929249..10008657)

Chromosome 2 - NC_063270.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein phosphatase 99A Neighboring gene uncharacterized LOC125386692 Neighboring gene Down syndrome cell adhesion molecule-like protein Dscam2 Neighboring gene uncharacterized LOC125385936 Neighboring gene protein Cep78 homolog Neighboring gene phosphodiesterase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyBomTerr1.2

Genomic

  1. NC_063270.1 Reference iyBomTerr1.2

    Range
    15528289..15714497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048409987.1 → XP_048265944.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A9C6SBZ6

  2. XM_012320207.3 → XP_012175597.2  zeta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A9B2MS82
    Related
    ENSBTSP00005068707.1, ENSBTST00005061145.1

  3. XM_020868163.2 → XP_020723822.2  zeta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A9B7CZS8
    Related
    ENSBTSP00005059435.1, ENSBTST00005080714.1

  4. XM_048409996.1 → XP_048265953.1  zeta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A9C6W786
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases