U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ABCD ATP binding cassette subfamily D [ Bombus terrestris (buff-tailed bumblebee) ]

Gene ID: 100643487, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
ABCD
Gene description
ATP binding cassette subfamily D
See related
EnsemblRapid:ENSBTSG00005036505
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus terrestris
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus
Orthologs
fruit fly honey bee all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ABCD in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
103 current iyBomTerr1.2 (GCF_910591885.1) 8 NC_063276.1 (453710..457278, complement)
102 previous assembly Bter_1.0 (GCF_000214255.1) Linkage Group LG B08 NC_015769.1 (268264..271825, complement)

Chromosome 8 - NC_063276.1Genomic Context describing neighboring genes Neighboring gene C-terminal binding protein Neighboring gene uncharacterized LOC125385537 Neighboring gene protein glass Neighboring gene uncharacterized LOC110119514 Neighboring gene osmotic avoidance abnormal protein 3 Neighboring gene Cytochrome c oxidase assembly factor 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Study of the Metatranscriptome of Eight Social and Solitary Wild Bee Species Reveals Novel Viruses and Bee Parasites. Schoonvaere K, et al. Front Microbiol, 2018. PMID 29491849, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain fatty acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty acid import into peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peroxisome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ATP-binding cassette sub-family D member
Names
ATP-binding cassette sub-family D member 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyBomTerr1.2

Genomic

  1. NC_063276.1 Reference iyBomTerr1.2

    Range
    453710..457278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048408026.1 → XP_048263983.1  ATP-binding cassette sub-family D member isoform X2

    UniProtKB/TrEMBL
    A0A9C6S8S8

  2. XM_012310837.3 → XP_012166227.1  ATP-binding cassette sub-family D member isoform X1

    UniProtKB/TrEMBL
    A0A9B2JGS6
    Related
    ENSBTSP00005063030.1, ENSBTST00005074458.1
    Conserved Domains (3) summary
    cd03223
    Location:496 → 708
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    TIGR00954
    Location:42 → 710
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein
    pfam06472
    Location:91 → 376
    ABC_membrane_2; ABC transporter transmembrane region 2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases