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MTA1-like metastasis associated 1-like [ Bombus terrestris (buff-tailed bumblebee) ]

Gene ID: 100643361, updated on 10-Oct-2024

Summary

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Gene symbol
MTA1-like
Gene description
metastasis associated 1-like
See related
EnsemblRapid:ENSBTSG00005031687
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus terrestris
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus
Orthologs
fruit fly honey bee all
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Genomic context

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See MTA1-like in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
103 current iyBomTerr1.2 (GCF_910591885.1) 5 NC_063273.1 (1489869..1499245)
102 previous assembly Bter_1.0 (GCF_000214255.1) Linkage Group LG B05 NC_015766.1 (945202..955686)

Chromosome 5 - NC_063273.1Genomic Context describing neighboring genes Neighboring gene MAD2L1-binding protein Neighboring gene uncharacterized LOC100643691 Neighboring gene hairless Neighboring gene small nucleolar RNA U85 Neighboring gene splicing factor 3B subunit 2 Neighboring gene GPI ethanolamine phosphate transferase 1 Neighboring gene putative OPA3-like protein CG13603 Neighboring gene uncharacterized LOC100652114

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metastasis-associated protein MTA2; metastasis-associated protein MTA3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyBomTerr1.2

Genomic

  1. NC_063273.1 Reference iyBomTerr1.2

    Range
    1489869..1499245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048406078.1 → XP_048262035.1  metastasis-associated protein MTA3 isoform X1

    UniProtKB/TrEMBL
    A0A9C6VW26

  2. XM_048406080.1 → XP_048262037.1  metastasis-associated protein MTA3 isoform X4

    UniProtKB/TrEMBL
    A0A9C6W524

  3. XM_020863167.2 → XP_020718826.1  metastasis-associated protein MTA2 isoform X2

    UniProtKB/TrEMBL
    A0A9B7HZH7
    Related
    ENSBTSP00005058017.1, ENSBTST00005046439.1
    Conserved Domains (5) summary
    cd11661
    Location:364 → 409
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:490 → 537
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:32 → 249
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:240 → 296
    ELM2; ELM2 domain
    cl28144
    Location:694 → 900
    Herpes_TK; Thymidine kinase from herpesvirus

  4. XM_048406079.1 → XP_048262036.1  metastasis-associated protein MTA3 isoform X3

    UniProtKB/TrEMBL
    A0A9C6W7V7
    Related
    ENSBTSP00005052779.1, ENSBTST00005072238.1
Nucleotide Protein
Heading Accession and Version

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