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LOC100639950 procollagen galactosyltransferase 1-like [ Amphimedon queenslandica ]

Gene ID: 100639950, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100639950
Gene description
procollagen galactosyltransferase 1-like
See related
EnsemblRapid:LOC100639950
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphimedon queenslandica
Lineage
Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
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Genomic context

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See LOC100639950 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546441.1 (146063..162712)

NW_003546441.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(I) chain Neighboring gene G protein-activated inward rectifier potassium channel 4-like Neighboring gene potassium inward rectifier channel A Neighboring gene uncharacterized LOC109583151 Neighboring gene uncharacterized LOC109583137

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003546441.1 Unplaced Scaffold Reference v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0 Primary Assembly

Genomic

  1. NW_003546441.1 Reference v1.0 Primary Assembly

    Range
    146063..162712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019998361.1 → XP_019853920.1  procollagen galactosyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A1X7UJG4, A0AAN0JA54
    Related
    XP_019853920.1, XM_019998361.1
    Conserved Domains (3) summary
    cd06532
    Location:329 → 510
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    pfam08572
    Location:278 → 343
    PRP3; pre-mRNA processing factor 3 (PRP3)
    cl11394
    Location:48 → 166
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_019998362.1 → XP_019853921.1  procollagen galactosyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A1X7UJG4, A0AAN0JA54
    Related
    XP_019853921.1, XM_019998362.1
    Conserved Domains (3) summary
    cd06532
    Location:329 → 510
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    pfam08572
    Location:278 → 343
    PRP3; pre-mRNA processing factor 3 (PRP3)
    cl11394
    Location:48 → 166
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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