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LOC100634573 chondroitin sulfate synthase 1-like [ Amphimedon queenslandica ]

Gene ID: 100634573, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100634573
Gene description
chondroitin sulfate synthase 1-like
See related
EnsemblRapid:LOC100634573
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphimedon queenslandica
Lineage
Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
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Genomic context

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See LOC100634573 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546477.1 (124864..129387, complement)

NW_003546477.1Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate synthase 1-like Neighboring gene chondroitin sulfate synthase 1-like Neighboring gene multidrug resistance protein 1-like Neighboring gene uncharacterized LOC109583692 Neighboring gene ABC transporter B family member 25-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003546477.1 Unplaced Scaffold Reference v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0 Primary Assembly

Genomic

  1. NW_003546477.1 Reference v1.0 Primary Assembly

    Range
    124864..129387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003388140.2 → XP_003388188.1  chondroitin sulfate synthase 1-like

    UniProtKB/TrEMBL
    A0A1X7UFN0
    Related
    XP_003388188.1, XM_003388140.2
    Conserved Domains (1) summary
    pfam05679
    Location:246 → 752
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein
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Molecular Biology Databases