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CPN2 carboxypeptidase N subunit 2 [ Equus caballus (horse) ]

Gene ID: 100630228, updated on 17-Aug-2024

Summary

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Official Symbol
CPN2provided by VGNC
Official Full Name
carboxypeptidase N subunit 2provided by VGNC
Primary source
VGNC:VGNC:16822
See related
Ensembl:ENSECAG00000004837
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CPN2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 19 NC_009162.3 (33682968..33693081, complement)

Chromosome 19 - NC_009162.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106782005 Neighboring gene uncharacterized LOC106782006 Neighboring gene leucine rich repeat containing 15 Neighboring gene uncharacterized LOC102149024

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009162.3 Chromosome 19 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxypeptidase N subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009162.3 Reference EquCab3.0 Primary Assembly

    Range
    33682968..33693081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003363364.4 → XP_003363412.1  carboxypeptidase N subunit 2

    See identical proteins and their annotated locations for XP_003363412.1

    UniProtKB/TrEMBL
    A0A9L0SFU2, F6QFD9
    Conserved Domains (6) summary
    TIGR00864
    Location:371 → 443
    PCC; polycystin cation channel protein
    smart00013
    Location:21 → 52
    LRRNT; Leucine rich repeat N-terminal domain
    sd00031
    Location:387 → 399
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:123 → 146
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:73 → 131
    LRR_8; Leucine rich repeat
    cl26018
    Location:108 → 356
    NEL; C-terminal novel E3 ligase, LRR-interacting

  2. XM_023623517.1 → XP_023479285.1  carboxypeptidase N subunit 2

    UniProtKB/TrEMBL
    A0A9L0SFU2, F6QFD9
    Related
    ENSECAP00000003294.1, ENSECAT00000004745.3
    Conserved Domains (6) summary
    TIGR00864
    Location:371 → 443
    PCC; polycystin cation channel protein
    smart00013
    Location:21 → 52
    LRRNT; Leucine rich repeat N-terminal domain
    sd00031
    Location:387 → 399
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:123 → 146
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:73 → 131
    LRR_8; Leucine rich repeat
    cl26018
    Location:108 → 356
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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