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HABP4 hyaluronan binding protein 4 [ Equus caballus (horse) ]

Gene ID: 100629478, updated on 15-Aug-2024

Summary

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Gene symbol
HABP4
Gene description
hyaluronan binding protein 4
See related
Ensembl:ENSECAG00000008748
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See HABP4 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 23 NC_009166.3 (779744..819944, complement)

Chromosome 23 - NC_009166.3Genomic Context describing neighboring genes Neighboring gene peroxiredoxin like 2C Neighboring gene cell division cycle 14B Neighboring gene ferritin heavy chain pseudogene Neighboring gene translation initiation factor IF-2-like Neighboring gene zinc finger protein 367

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009166.3 Chromosome 23 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intracellular hyaluronan-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009166.3 Reference EquCab3.0 Primary Assembly

    Range
    779744..819944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023627088.1 → XP_023482856.1  intracellular hyaluronan-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2H6D4, F6UC73
    Related
    ENSECAP00000006679.4, ENSECAT00000008863.4
    Conserved Domains (2) summary
    pfam04774
    Location:220 → 300
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:18 → 167
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

  2. XM_023627087.1 → XP_023482855.1  intracellular hyaluronan-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H2A1, A0A3Q2H6D4
    Related
    ENSECAP00000027640.1, ENSECAT00000047681.2
    Conserved Domains (2) summary
    pfam04774
    Location:220 → 323
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:18 → 167
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

  3. XM_023627089.1 → XP_023482857.1  intracellular hyaluronan-binding protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2H6D4
    Conserved Domains (2) summary
    pfam04774
    Location:220 → 323
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:18 → 167
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal
Nucleotide Protein
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