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LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated [ Equus caballus (horse) ]

Gene ID: 100629288, updated on 8-Mar-2024

Summary

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Official Symbol
LSM3provided by VGNC
Official Full Name
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associatedprovided by VGNC
Primary source
VGNC:VGNC:19819
See related
Ensembl:ENSECAG00000007803
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See LSM3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (4510390..4527914)
102 previous assembly EquCab2.0 (GCF_000002305.2) 16 NC_009159.2 (3044912..3062368)

Chromosome 16 - NC_009159.3Genomic Context describing neighboring genes Neighboring gene transmembrane protein 43 Neighboring gene XPC complex subunit, DNA damage recognition and repair factor Neighboring gene uncharacterized LOC111768289 Neighboring gene uncharacterized LOC102150554 Neighboring gene solute carrier family 6 member 6 Neighboring gene microRNA mir-9168-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm3
Names
LSM3 homolog, U6 small nuclear RNA associated

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009159.3 Reference EquCab3.0 Primary Assembly

    Range
    4510390..4527914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003363065.3 → XP_003363113.1  U6 snRNA-associated Sm-like protein LSm3

    See identical proteins and their annotated locations for XP_003363113.1

    UniProtKB/TrEMBL
    A0A9L0RN55, A0A9L0T2N6
    Related
    ENSECAP00000081450.1, ENSECAT00000098806.1
    Conserved Domains (1) summary
    cd01730
    Location:16 → 97
    LSm3; Like-Sm protein 3
Nucleotide Protein
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