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SOAT1 sterol O-acyltransferase 1 [ Sus scrofa (pig) ]

Gene ID: 100628166, updated on 17-Aug-2024

Summary

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Official Symbol
SOAT1provided by VGNC
Official Full Name
sterol O-acyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:93327
See related
Ensembl:ENSSSCG00000021464
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 6.3), spleen (RPKM 4.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (121045211..121112393)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (132895468..132952031, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255520 Neighboring gene torsin family 3 member A Neighboring gene ABL proto-oncogene 2, non-receptor tyrosine kinase Neighboring gene glutathione S-transferase kappa 1 pseudogene Neighboring gene axonemal dynein light chain domain containing 1 Neighboring gene NPHS2 stomatin family member, podocin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty-acyl-CoA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol O-acyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    121045211..121112393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021063736.1 → XP_020919395.1  sterol O-acyltransferase 1

    UniProtKB/TrEMBL
    A0A4X1U2T5, A0A8D0LQT2, A0A8D0XBF5, I3L5S1
    Conserved Domains (1) summary
    pfam03062
    Location:170 → 519
    MBOAT; MBOAT, membrane-bound O-acyltransferase family

  2. XM_003357556.5 → XP_003357604.2  sterol O-acyltransferase 1

    UniProtKB/TrEMBL
    A0A4X1U2T5, A0A8D0LQT2, A0A8D0XBF5, I3L5S1
    Related
    ENSSSCP00000019371.2, ENSSSCT00000023854.4
    Conserved Domains (1) summary
    pfam03062
    Location:170 → 519
    MBOAT; MBOAT, membrane-bound O-acyltransferase family
Nucleotide Protein
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