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TOR1AIP2 torsin 1A interacting protein 2 [ Sus scrofa (pig) ]

Gene ID: 100627970, updated on 17-Aug-2024

Summary

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Official Symbol
TOR1AIP2provided by VGNC
Official Full Name
torsin 1A interacting protein 2provided by VGNC
Primary source
VGNC:VGNC:94318
See related
Ensembl:ENSSSCG00000035741
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in liver (RPKM 9.7), kidney (RPKM 8.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TOR1AIP2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (121476501..121516611, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003613089.1 (26450..36223, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene tudor domain containing 5 Neighboring gene family with sequence similarity 163 member A Neighboring gene torsin-1A-interacting protein 2 Neighboring gene torsin 1A interacting protein 1 Neighboring gene centrosomal protein 350 Neighboring gene quiescin sulfhydryl oxidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin A interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243389.1 → NP_001230318.1  torsin A interacting protein 2

    Status: VALIDATED

    Source sequence(s)
    AEMK02000070, CX057057, FS693882
    UniProtKB/TrEMBL
    A0A4X1U6E1, A0A8D1KD87
    Related
    ENSSSCP00000023296.3, ENSSSCT00000030836.3
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 473
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    121476501..121516611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021102143.1 → XP_020957802.1  torsin A interacting protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A4X1U6E1, A0A8D1KD87
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 473
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_021102141.1 → XP_020957800.1  torsin A interacting protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8D0JEP4
    Conserved Domains (1) summary
    pfam05609
    Location:189 → 645
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_021102140.1 → XP_020957799.1  torsin A interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D0JEP4
    Conserved Domains (1) summary
    pfam05609
    Location:189 → 650
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_021102142.1 → XP_020957801.1  torsin A interacting protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A4X1U6E1, A0A8D1KD87
    Related
    ENSSSCP00000043037.3, ENSSSCT00000060552.3
    Conserved Domains (1) summary
    pfam05609
    Location:17 → 473
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein Strain
Heading Accession and Version

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