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PMPCA peptidase, mitochondrial processing subunit alpha [ Sus scrofa (pig) ]

Gene ID: 100627838, updated on 17-Aug-2024

Summary

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Official Symbol
PMPCAprovided by VGNC
Official Full Name
peptidase, mitochondrial processing subunit alphaprovided by VGNC
Primary source
VGNC:VGNC:91591
See related
Ensembl:ENSSSCG00000031413
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 42.8), kidney (RPKM 40.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PMPCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) Unplaced Scaffold NW_018084833.1 (1302694..1313522, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003541265.1 (821..6712, complement)

NW_018084833.1Genomic Context describing neighboring genes Neighboring gene SEC16 homolog A, endoplasmic reticulum export factor Neighboring gene inositol polyphosphate-5-phosphatase E Neighboring gene endosome associated trafficking regulator 1 Neighboring gene small nuclear RNA activating complex polypeptide 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein processing involved in protein targeting to mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: mitochondrial-processing peptidase subunit alpha
Names
peptidase, mitochondrial processing alpha subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NW_018084833.1 Reference Sscrofa11.1 Primary Assembly

    Range
    1302694..1313522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021081154.1 → XP_020936813.1  LOW QUALITY PROTEIN: mitochondrial-processing peptidase subunit alpha

    UniProtKB/TrEMBL
    A0A4X1SPP9
    Related
    ENSSSCP00000060560.2, ENSSSCT00000070721.2
    Conserved Domains (1) summary
    COG0612
    Location:65 → 504
    PqqL; Predicted Zn-dependent peptidase [General function prediction only]
Nucleotide Protein
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