U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LSM14B LSM family member 14B [ Sus scrofa (pig) ]

Gene ID: 100626826, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
LSM14Bprovided by VGNC
Official Full Name
LSM family member 14Bprovided by VGNC
Primary source
VGNC:VGNC:95691
See related
Ensembl:ENSSSCG00000026052
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 48.6), subcutaneous adipose (RPKM 15.4) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LSM14B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (61553953..61566504)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (69084357..69090568, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene cadherin 4 Neighboring gene TATA-box binding protein associated factor 4 Neighboring gene uncharacterized LOC106506742 Neighboring gene SS18L1 subunit of BAF chromatin remodeling complex Neighboring gene proteasome 20S subunit alpha 7 Neighboring gene mitochondrial ribosome associated GTPase 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein LSM14 homolog B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    61553953..61566504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021078208.1 → XP_020933867.1  protein LSM14 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A287BMP1, A0A8D0T2Y9, A0A8D1UYJ7
    Related
    ENSSSCP00000057447.2, ENSSSCT00000038192.3
    Conserved Domains (2) summary
    cd01736
    Location:6 → 79
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:248 → 349
    FDF; FDF domain

  2. XM_021078207.1 → XP_020933866.1  protein LSM14 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A287BAU6, A0A480ILE5, A0A480NEJ2, A0A8D0W9W0, A0A8D1G8J9, A0A8D1NVC1
    Related
    ENSSSCP00000053189.2, ENSSSCT00000042965.3
    Conserved Domains (2) summary
    cd01736
    Location:6 → 79
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:287 → 388
    FDF; FDF domain

RNA

  1. XR_002340116.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.