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HEPACAM2 HEPACAM family member 2 [ Sus scrofa (pig) ]

Gene ID: 100626473, updated on 17-Aug-2024

Summary

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Official Symbol
HEPACAM2provided by VGNC
Official Full Name
HEPACAM family member 2provided by VGNC
Primary source
VGNC:VGNC:88846
See related
Ensembl:ENSSSCG00000025870
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in kidney (RPKM 4.2), mixtures (RPKM 1.0) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See HEPACAM2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (73020279..73074872, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (79735226..79743982, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102161391 Neighboring gene chromobox protein homolog 3 pseudogene Neighboring gene sterile alpha motif domain-containing protein 9 Neighboring gene VPS50 subunit of EARP/GARPII complex Neighboring gene calcitonin receptor Neighboring gene microRNA mir-489

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
HEPACAM family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    73020279..73074872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003357438.4 → XP_003357486.3  HEPACAM family member 2 isoform X6

    UniProtKB/TrEMBL
    A0A8D0LYD9
    Conserved Domains (2) summary
    pfam13927
    Location:105 → 180
    Ig_3; Immunoglobulin domain
    cl11960
    Location:2 → 99
    Ig; Immunoglobulin domain

  2. XM_021102395.1 → XP_020958054.1  HEPACAM family member 2 isoform X5

    UniProtKB/TrEMBL
    A0A8D0LYD9
    Conserved Domains (2) summary
    pfam13927
    Location:105 → 180
    Ig_3; Immunoglobulin domain
    cl11960
    Location:2 → 99
    Ig; Immunoglobulin domain

  3. XM_021102394.1 → XP_020958053.1  HEPACAM family member 2 isoform X5

    UniProtKB/TrEMBL
    A0A8D0LYD9
    Conserved Domains (2) summary
    pfam13927
    Location:105 → 180
    Ig_3; Immunoglobulin domain
    cl11960
    Location:2 → 99
    Ig; Immunoglobulin domain

  4. XM_021102393.1 → XP_020958052.1  HEPACAM family member 2 isoform X5

    UniProtKB/TrEMBL
    A0A8D0LYD9
    Conserved Domains (2) summary
    pfam13927
    Location:105 → 180
    Ig_3; Immunoglobulin domain
    cl11960
    Location:2 → 99
    Ig; Immunoglobulin domain

  5. XM_021102392.1 → XP_020958051.1  HEPACAM family member 2 isoform X5

    UniProtKB/TrEMBL
    A0A8D0LYD9
    Conserved Domains (2) summary
    pfam13927
    Location:105 → 180
    Ig_3; Immunoglobulin domain
    cl11960
    Location:2 → 99
    Ig; Immunoglobulin domain

  6. XM_021102396.1 → XP_020958055.1  HEPACAM family member 2 isoform X7

    UniProtKB/TrEMBL
    A0A8D0LY57, A0A8D1FXI5
    Conserved Domains (2) summary
    pfam13927
    Location:148 → 223
    Ig_3; Immunoglobulin domain
    cl11960
    Location:37 → 142
    Ig; Immunoglobulin domain

  7. XM_021102388.1 → XP_020958047.1  HEPACAM family member 2 isoform X1

    UniProtKB/TrEMBL
    A0A480E1R6, A0A4X1U590, A0A8D0LYD9
    Conserved Domains (2) summary
    pfam13927
    Location:148 → 223
    Ig_3; Immunoglobulin domain
    cl11960
    Location:37 → 142
    Ig; Immunoglobulin domain

  8. XM_021102389.1 → XP_020958048.1  HEPACAM family member 2 isoform X2

    UniProtKB/TrEMBL
    A0A4X1U2B9, A0A8D0LY57, A0A8D1FXI5
    Conserved Domains (2) summary
    pfam13927
    Location:148 → 223
    Ig_3; Immunoglobulin domain
    cl11960
    Location:37 → 142
    Ig; Immunoglobulin domain

  9. XM_021102397.1 → XP_020958056.1  HEPACAM family member 2 isoform X8

    UniProtKB/TrEMBL
    A0A4X1TZK8, I3LBM8
    Related
    ENSSSCP00000021449.4, ENSSSCT00000028375.4
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 211
    Ig_3; Immunoglobulin domain
    cl11960
    Location:25 → 130
    Ig; Immunoglobulin domain

  10. XM_021102390.1 → XP_020958049.1  HEPACAM family member 2 isoform X3

    UniProtKB/TrEMBL
    A0A8D0LYD9, I3LQ56
    Related
    ENSSSCP00000026234.4, ENSSSCT00000024549.4
    Conserved Domains (2) summary
    pfam13927
    Location:148 → 223
    Ig_3; Immunoglobulin domain
    cl11960
    Location:37 → 142
    Ig; Immunoglobulin domain

  11. XM_021102391.1 → XP_020958050.1  HEPACAM family member 2 isoform X4

    UniProtKB/TrEMBL
    A0A8D0LYD9, I3LQ56
    Conserved Domains (2) summary
    pfam13927
    Location:148 → 223
    Ig_3; Immunoglobulin domain
    cl11960
    Location:37 → 142
    Ig; Immunoglobulin domain

RNA

  1. XR_002347042.1 RNA Sequence

  2. XR_002347044.1 RNA Sequence

  3. XR_002347043.1 RNA Sequence

  4. XR_002347041.1 RNA Sequence

  5. XR_002347040.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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